GElist-class: Class "GElist"
In methylPipe: Base resolution DNA methylation data analysis

Description Objects from the Class Slots Methods Author(s) See Also Examples

This class is used in the methylPipe library to collect a set of GEcollection objects

Objects can be created by calls of the form new("GElist", ...) or using the function GElist(Objlist,names), see below. GElist are a collection of GEcollection objects (see GElist-class).

Objlist:: Object of class "list" : a list where each item is a GEcollection object
names:: Object of class "character" : vector of the names of the objects

"[[": signature(x = "GElist"): subsets the GElist returning a specific GEcollection object
"[[<-": signature(x = "GElist"): replaces the specific GEcollection object in the GElist
"[": signature(x = "GElist"): subsets the GElist returning another GElist

Mattia Pelizzola

GElist-class

gecollect_file <- system.file('extdata', 'gec.H1.Rdata', package='methylPipe')
load(gecollect_file)
gec1 <- gec.H1[start(gec.H1) < 153924]
gec2 <- gec.H1[start(gec.H1) > 153924]
gel.set <- GElist(g1=gec1, g2=gec2)