aggregate_top_taxa: Aggregate Top Taxa
In microbiome: Microbiome Analytics
Description
Usage
Arguments
Value
Author(s)
References
Description
Summarize phyloseq: combine other than the most abundant taxa.
Usage
1
aggregate_top_taxa(x, top, level)
Arguments
x
phyloseq-class object
top
Keep the top-n taxa, and merge the rest under the category
'Other'. Instead of top-n numeric this can also be a character vector
listing the groups to combine.
level
Summarization level (from rank_names(pseq))
Value
phyloseq-class object
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
microbiome documentation built on Nov. 8, 2020, 5:08 p.m.
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Description Usage Arguments Value Author(s) References
Description
Summarize phyloseq: combine other than the most abundant taxa.
Usage
1 | aggregate_top_taxa(x, top, level)
|
Arguments
x |
|
top |
Keep the top-n taxa, and merge the rest under the category 'Other'. Instead of top-n numeric this can also be a character vector listing the groups to combine. |
level |
Summarization level (from |
Value
phyloseq-class object
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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