map_levels: Map Taxonomic Levels

In microbiome: Microbiome Analytics

Description

Map taxa between hierarchy levels.

Usage

map_levels(taxa = NULL, from, to, data)

Arguments

taxa	taxa to convert; if NULL then considering all taxa in the tax.table
from	convert from taxonomic level
to	convert to taxonomic level
data	Either a phyloseq object or its taxonomyTable-class , see the phyloseq package.

Value

mappings

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation('microbiome')

Examples

data(dietswap)
m <- map_levels('Akkermansia', from='Genus', to='Phylum',
tax_table(dietswap))
m <- map_levels('Verrucomicrobia', from='Phylum', to='Genus',
tax_table(dietswap))

microbiome documentation built on Nov. 8, 2020, 5:08 p.m.