boxplot_abundance: Abundance Boxplot

In microbiome: Microbiome Analytics

Description

Plot phyloseq abundances.

Usage

boxplot_abundance(
  d,
  x,
  y,
  line = NULL,
  violin = FALSE,
  na.rm = FALSE,
  show.points = TRUE
)

Arguments

d	phyloseq-class object
x	Metadata variable to map to the horizontal axis.
y	OTU to map on the vertical axis
line	The variable to map on lines
violin	Use violin version of the boxplot
na.rm	Remove NAs
show.points	Include data points in the figure

Details

The directionality of change in paired boxplot is indicated by the colors of the connecting lines.

Value

A ggplot plot object

Examples

data(peerj32)
p <- boxplot_abundance(peerj32$phyloseq, x='time', y='Akkermansia',
   line='subject')

microbiome documentation built on Nov. 8, 2020, 5:08 p.m.