densityplot: Density Plot

In microbiome: Microbiome Analytics

Description

Density visualization for data points overlaid on cross-plot.

Usage

densityplot(
  x,
  main = NULL,
  x.ticks = 10,
  rounding = 0,
  add.points = TRUE,
  col = "black",
  adjust = 1,
  size = 1,
  legend = FALSE,
  shading = TRUE
)

Arguments

x	Data matrix to plot. The first two columns will be visualized as a cross-plot.
main	title text
x.ticks	Number of ticks on the X axis
rounding	Rounding for X axis tick values
add.points	Plot the data points as well
col	Color of the data points. NAs are marked with darkgray.
adjust	Kernel width adjustment
size	point size
legend	plot legend TRUE/FALSE
shading	Shading

Value

ggplot2 object

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation('microbiome')

Examples

# p <- densityplot(cbind(rnorm(100), rnorm(100)))

Example output

Loading required package: phyloseq
Loading required package: ggplot2

microbiome R package (microbiome.github.com)
    


 Copyright (C) 2011-2020 Leo Lahti, 
    Sudarshan Shetty et al. <microbiome.github.io>


Attaching package: ‘microbiome’

The following object is masked from ‘package:ggplot2’:

    alpha

The following object is masked from ‘package:base’:

    transform

microbiome documentation built on Nov. 8, 2020, 5:08 p.m.