Description Usage Arguments Details Value Author(s) Examples
Plot single-position (single CpG) methylation values as a function of a categorical or continuous phenotype
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dat |
An |
cpg |
A character vector of the CpG position identifiers to be plotted. |
pheno |
A vector of phenotype values. |
type |
Is the phenotype categorical or continuous? |
measure |
Should Beta values or log-ratios (M) be plotted? |
ylim |
y-axis limits. |
ylab |
y-axis label. |
xlab |
x-axis label. |
fitLine |
Fit a least-squares best fit line when using a continuous phenotype. |
mainPrefix |
Text to prepend to the CpG name in the plot main title. |
mainSuffix |
Text to append to the CpG name in the plot main title. |
This function plots methylation values (Betas or log-ratios) at individual CpG loci as a function of a phenotype.
No return value. Plots are produced as a side-effect.
Martin Aryee aryee@jhu.edu.
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