ndexr-package: NDEx R client library

Description Details Author(s) Examples

Description

The ndexr package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Details

Package: ndexr
Type: Package
Version: 2.0.7
Date: 2016-12-02
License: TBD

Author(s)

Frank Kramer frank.kramer@med.uni-goettingen.de

Florian Auer florian.auer@med.uni-goettingen.de

Alex Ishkin aleksandr.ishkin@thomsonreuters.com

Dexter Pratt depratt@ucsc.edu

Examples

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## Not run: 
require(ndexr)
###connect anonymously
ndexcon1 = ndex_connect(verbose=T)
###get network api
apidata1 = ndex_get_network.api(ndexcon1)
###find some networks containing p53
pws1 = ndexr::ndex_find_networks(ndexcon1,"p53")
###get complete network as RCX
rcx1 = ndex.get.complete.network(ndexcon1,pws1[1,"externalId"])
###convert to rcxgraph and back
rcxgraph1 = rcx_toRCXgraph(rcx1)
plot(rcxgraph1, vertex.label=V(rcxgraph1)$n, edge.label=E(rcxgraph1)$i)

## End(Not run)

ndexr documentation built on April 29, 2020, 5:20 a.m.