omicade4: Multiple co-inertia analysis of omics datasets

Multiple co-inertia analysis of omics datasets

Author
Chen Meng, Aedin Culhane, Amin M. Gholami.
Date of publication
None
Maintainer
Chen Meng <mengchen18@gmail.de>
License
GPL-2
Version
1.14.0

View on Bioconductor

Man pages

mcia
multiple co-inertia analysis
NCI60_4arrays
Microarray gene expression profiles of the NCI 60 cell lines...
omicade4-package
multiple co-inertia analysis of omics datasets
plotVar
Plot variable (gene) spaces of result from MCIA or CIA
plotVar.cia
Plot variable space of result from 'cia'
plotVar.mcia
Plot variable space of result from 'mcia'
selectVar
Selecting variables (genes) from result of MCIA or CIA...
selectVar.cia
Selecting variables from result of CIA
selectVar.mcia
Selecting variables from result of MCIA
topVar
Selecting top weighted variables (genes) from result of MCIA...
topVar.cia
Selecting top weighted variables (genes) from result of CIA
topVar.mcia
Selecting top weighted variables (genes) from result of MCIA

Files in this package

omicade4/DESCRIPTION
omicade4/NAMESPACE
omicade4/R
omicade4/R/mcia.R
omicade4/R/omicade4-0.99.2-internal.R
omicade4/R/plot.mcia.R
omicade4/R/plotVar.R
omicade4/R/plotVar.cia.R
omicade4/R/plotVar.mcia.R
omicade4/R/selectVar.R
omicade4/R/selectVar.cia.R
omicade4/R/selectVar.mcia.R
omicade4/R/splot.mol.mcia.R
omicade4/R/splot.sample.mcia.R
omicade4/R/topVar.R
omicade4/build
omicade4/build/vignette.rds
omicade4/data
omicade4/data/NCI60_4arrays.rda
omicade4/inst
omicade4/inst/CITATION
omicade4/inst/NEWS
omicade4/inst/doc
omicade4/inst/doc/omicade4.R
omicade4/inst/doc/omicade4.Rnw
omicade4/inst/doc/omicade4.bib
omicade4/inst/doc/omicade4.pdf
omicade4/man
omicade4/man/NCI60_4arrays.Rd
omicade4/man/mcia.Rd
omicade4/man/omicade4-package.Rd
omicade4/man/plotVar.Rd
omicade4/man/plotVar.cia.Rd
omicade4/man/plotVar.mcia.Rd
omicade4/man/selectVar.Rd
omicade4/man/selectVar.cia.Rd
omicade4/man/selectVar.mcia.Rd
omicade4/man/topVar.Rd
omicade4/man/topVar.cia.Rd
omicade4/man/topVar.mcia.Rd
omicade4/vignettes
omicade4/vignettes/omicade4.Rnw
omicade4/vignettes/omicade4.bib