omicade4: Multiple co-inertia analysis of omics datasets
Version 1.16.1

Multiple co-inertia analysis of omics datasets

AuthorChen Meng, Aedin Culhane, Amin M. Gholami.
Bioconductor views Classification Clustering MultipleComparison Software
Date of publicationNone
MaintainerChen Meng <mengchen18@gmail.de>
LicenseGPL-2
Version1.16.1
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("omicade4")

Getting started

Package overview

Popular man pages

mcia: multiple co-inertia analysis
omicade4-package: multiple co-inertia analysis of omics datasets
plotVar: Plot variable (gene) spaces of result from MCIA or CIA
plotVar.mcia: Plot variable space of result from 'mcia'
selectVar: Selecting variables (genes) from result of MCIA or CIA...
selectVar.mcia: Selecting variables from result of MCIA
topVar.cia: Selecting top weighted variables (genes) from result of CIA
See all...

All man pages Function index File listing

Man pages

mcia: multiple co-inertia analysis
NCI60_4arrays: Microarray gene expression profiles of the NCI 60 cell lines...
omicade4-package: multiple co-inertia analysis of omics datasets
plotVar: Plot variable (gene) spaces of result from MCIA or CIA
plotVar.cia: Plot variable space of result from 'cia'
plotVar.mcia: Plot variable space of result from 'mcia'
selectVar: Selecting variables (genes) from result of MCIA or CIA...
selectVar.cia: Selecting variables from result of CIA
selectVar.mcia: Selecting variables from result of MCIA
topVar: Selecting top weighted variables (genes) from result of MCIA...
topVar.cia: Selecting top weighted variables (genes) from result of CIA
topVar.mcia: Selecting top weighted variables (genes) from result of MCIA

Functions

Files

DESCRIPTION
NAMESPACE
R
R/mcia.R
R/omicade4-0.99.2-internal.R
R/plot.mcia.R
R/plotVar.R
R/plotVar.cia.R
R/plotVar.mcia.R
R/selectVar.R
R/selectVar.cia.R
R/selectVar.mcia.R
R/splot.mol.mcia.R
R/splot.sample.mcia.R
R/topVar.R
build
build/vignette.rds
data
data/NCI60_4arrays.rda
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/omicade4.R
inst/doc/omicade4.Rnw
inst/doc/omicade4.bib
inst/doc/omicade4.pdf
man
man/NCI60_4arrays.Rd
man/mcia.Rd
man/omicade4-package.Rd
man/plotVar.Rd
man/plotVar.cia.Rd
man/plotVar.mcia.Rd
man/selectVar.Rd
man/selectVar.cia.Rd
man/selectVar.mcia.Rd
man/topVar.Rd
man/topVar.cia.Rd
man/topVar.mcia.Rd
vignettes
vignettes/omicade4.Rnw
vignettes/omicade4.bib
omicade4 documentation built on May 20, 2017, 10:03 p.m.

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