selectVar.cia: Selecting variables from result of CIA

In omicade4: Multiple co-inertia analysis of omics datasets

Description

To select variables in CIA variable space, the function is called by selectVar.

Usage

## S3 method for class 'cia'
selectVar(x, axis1 = 1, axis2 = 2, 
  df1.a1.lim = c(-Inf, Inf), df1.a2.lim = c(-Inf, Inf), 
  df2.a1.lim = df1.a1.lim, df2.a2.lim = df1.a2.lim, 
  sepID.data = NULL, sepID.sep = "_", ...)

Arguments

x	The result returned by cia
axis1	Integer, the column number for the x-axis. The default is 1.
axis2	Integer, the column number for the y-axis. The default is 2.
df1.a1.lim	A vector containing 2 numbers indicating the range of X axis of selected on the 1st data.frame. The first value limiting the lower boundary, the second value limiting the upper boundary.
df1.a2.lim	The range of Y axis of selected on the 1st datasets.
df2.a1.lim	The range of X axis of selected on the 2nd dataset.
df2.a2.lim	The range of Y axis of selected on the 2nd dataset.
sepID.data	See plotVar.mcia
sepID.sep	See plotVar.mcia
...	Other arguments

Details

cia projecting variables from different datasets to a two dimensional space. This function supplies a method selecting variables according to the co-ordinates of variables

Value

Returns a data.frame describing which variables are presented on which data.frame within the limited region(s).

Author(s)

Chen Meng

See Also

See Also as selectVar.mcia

omicade4 documentation built on Nov. 8, 2020, 7:47 p.m.