gate_tautstring: Taut String Density Estimator Gating

In openCyto: Hierarchical Gating Pipeline for flow cytometry data

Description

The taut string density estimator gating returns 0, 1, or more gates, depending on how many modes it identifies in the data.

Usage

tautstring(sorted_vector, modeprior = 0)

gate_tautstring(
  fr,
  channel,
  gate_range = NULL,
  min = NULL,
  max = NULL,
  filterId = ""
)

Arguments

sorted_vector	numeric vector of single cell expresion from a single cytometric channel.
modeprior	numeric scalar specifying the expected number of modes. Default 0 (autodetect). Rarely should this be set by the user.
fr	a flowFrame object
channel	The channel to gate.
gate_range	The range to look for a gate, no truncation occurs.
min	The min range of the data to truncate the flowFrame
max	The max range of the data to truncate the flowFrame
filterId	The id / name of the gate.

openCyto documentation built on Nov. 8, 2020, 5:40 p.m.