API for openCyto
Hierarchical Gating Pipeline for flow cytometry data

Global functions
.isPolyfunctional Man page
.prior_flowClust1d Man page
.prior_kmeans Man page
add,GatingHierarchy,ocRectRefGate-method Man page
add,GatingHierarchy,ocRectangleGate-method Man page
addGate_fast Source code
add_pop Man page Source code
alias Source code
argDeparser Source code
argParser Source code
as.data.table.gatingTemplate Man page Source code
between_interval Source code
boolMethod-class Man page
boundary Source code
center_mode Source code
checkFormals Source code
collapseData Source code
cytokine Man page Source code Source code
cytokine_cutpoint Source code
delete.helperGates Man page Source code
deriv_density Source code
dims,gtMethod-method Man page
dummyMethod-class Man page
fcEllipsoidGate Man page Source code
fcEllipsoidGate-class Man page
fcFilter-class Man page
fcFilterList Man page Source code
fcFilterList-class Man page
fcPolygonGate Man page Source code
fcPolygonGate-class Man page
fcRectangleGate Man page Source code
fcRectangleGate-class Man page
fcTree Man page Source code
fcTree-class Man page
find_peaks Source code
find_valleys Source code
flowClust.1d Man page Source code
flowClust.2d Man page Source code
gateToFilterResult Source code
gate_flowClust_1d Man page Source code
gate_flowClust_2d Man page Source code
gate_mindensity Man page Source code
gate_mindensity2 Man page Source code
gate_quad_sequential Man page Source code
gate_quad_tmix Man page Source code
gate_quantile Man page Source code
gate_tail Man page Source code
gating Man page
gating,boolMethod,GatingSet-method Man page
gating,boolMethod,GatingSetList-method Man page
gating,dummyMethod,GatingSet-method Man page
gating,dummyMethod,GatingSetList-method Man page
gating,gatingTemplate,GatingSet-method Man page
gating,gatingTemplate,GatingSetList-method Man page
gating,gtMethod,GatingSet-method Man page
gating,gtMethod,GatingSetList-method Man page
gating,polyFunctions,GatingSet-method Man page
gating,polyFunctions,GatingSetList-method Man page
gating,refGate,GatingSet-method Man page
gating,refGate,GatingSetList-method Man page
gatingTemplate Man page Source code
gatingTemplate,character-method Man page
gatingTemplate-class Man page
gating_adaptor Source code
gating_boolMethod Source code
gating_gatingTemplate Source code
gating_gtMethod Source code
gating_polyFunctions Source code
gating_refGate Source code
gen_1dgate Source code
gen_dummy_ref_gate Source code
gen_refGate Source code
get.helperGates Man page Source code
getChildren,gatingTemplate,character-method Man page
getEllipse Source code
getEllipseGate Source code
getFullPath Source code
getGate,fcTree,character-method Man page
getGate,gatingTemplate,character-method Man page
getNode Source code
getNodes,fcTree-method Man page
getNodes,gatingTemplate-method Man page
getParent,gatingTemplate,character-method Man page
getPluginMethods Source code
groupBy,gtMethod-method Man page
gtMethod-class Man page
gtPopulation-class Man page
gtSubsets-class Man page
isCollapse,gtMethod-method Man page
listgtMethods Man page Source code
make.name.tree Source code
mindensity Man page Source code
mindensity2 Man page Source code
mprovedMindensity Source code
names,gtMethod-method Man page
names,gtPopulation-method Man page
ocRectRefGate Man page Source code
ocRectRefGate-class Man page
ocRectangleGate-class Man page
onLoad Source code
openCyto Man page
openCyto-package Man page
openCyto.options Man page
parameters,gtMethod-method Man page
plot,fcFilterList,ANY-method Man page
plot,fcTree,character-method Man page
plot,gatingTemplate,ANY-method Man page
plot,gatingTemplate,character-method Man page
plot,gatingTemplate,missing-method Man page
plot,gatingTemplate-method Man page
plotTree Source code
polyFunctions-class Man page
polyfunction_nodes Source code
posteriors,fcFilter,ANY-method Man page
posteriors,fcFilter,character-method Man page
ppMethod,gatingTemplate,character-method Man page
ppMethod-class Man page
preprocess_csv Source code
preprocess_row Source code
preprocessing Source code
preprocessing,ppMethod,GatingSet-method Man page
prior_flowClust Man page Source code Source code
prior_flowClust1d Source code
prior_kmeans Source code
priors,fcFilter,ANY-method Man page
priors,fcFilter,character-method Man page
quadGate.seq Man page Source code
quadGate.tmix Man page Source code
quadGate2rectangleGates Source code
quantileGate Man page Source code
quantile_flowClust Source code
rangeGate Source code
read.FCS.csv Source code
read.flowSet.csv Source code
refGate-class Man page
register Source code
registerGatingFunction Man page Source code
registerPlugins Man page Source code
rotation_matrix Source code
sPolyfunctional Source code
sRegistered Source code
scale_huber Source code
show,boolMethod-method Man page
show,fcFilter-method Man page
show,gatingTemplate-method Man page
show,gtMethod-method Man page
singletGate Source code
splitTerms Source code
split_multi_parents Source code
standardize_flowFrame Source code
standardize_flowset Source code
tailgate Man page Source code
templateGen Man page Source code
toggle.helperGates Man page Source code
truncate_flowframe Source code
truncate_flowset Source code
unique_check_alias Source code
unlist2 Source code
unlockNamespace Source code
unregister Source code
validateFlowClustArgs Source code
validity_check_alias Source code
warpSet Source code
openCyto documentation built on May 2, 2018, 3:26 a.m.