Files in openCyto
Hierarchical Gating Pipeline for flow cytometry data

DESCRIPTION
README.md
NAMESPACE
inst/NEWS
inst/CITATION
inst/doc/openCytoVignette.html
inst/doc/HowToAutoGating.R inst/doc/HowToWriteCSVTemplate.R
inst/doc/HowToAutoGating.html
inst/doc/HowToWriteCSVTemplate.Rmd inst/doc/HowToAutoGating.Rmd inst/doc/openCytoVignette.Rmd
inst/doc/HowToWriteCSVTemplate.html
inst/doc/openCytoVignette.R
inst/extdata/gating_template/bcell.csv
inst/extdata/gating_template/ICS_080.csv
inst/extdata/gating_template/tcell.csv
inst/extdata/gating_template/ITN_Newell.csv
inst/extdata/gating_template/treg.csv
inst/extdata/gating_template/ICS.csv
vignettes/HowToWriteCSVTemplate.Rmd vignettes/HowToAutoGating.Rmd vignettes/openCytoVignette.Rmd
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-7-2.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-8-2.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-9-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-3-2.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-13-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-4-2.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-4-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-5-2.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-3-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-5-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-11-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-6-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-7-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-10-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-12-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-8-1.png
R/unlockNamespace.R R/fcTree-methods.R R/zzz.R R/coerce.R R/bayes-flowClust.R R/gating-methods.R R/fcFilter-methods.R R/RcppExports.R R/functions.R R/add_pop.R R/gtPopulation-methods.R R/pluginFramework.R R/AllClasses.R R/gatingTemplate-methods.R R/toggle.helperGates.R R/gtMethod-methods.R R/fcFilterList-methods.R R/csvTemplate-parser.R R/mindensity2.R R/gating-functions.R R/add.R R/wrapper-functions.R R/as.data.table.R R/preprocessing-method.R
src/RcppExports.cpp
src/misc.cpp
src/unlockNamespace.c
man/plot-fcFilterList-ANY-method.Rd man/gate_mindensity.Rd man/fcTree-class.Rd man/gtPopulation-class.Rd man/getParent-gatingTemplate-character-method.Rd man/plot-gatingTemplate-missing-method.Rd man/getNodes.Rd man/parameters-gtMethod-method.Rd man/flowClust2d.Rd man/getChildren-gatingTemplate-character-method.Rd man/fcEllipsoidGate.Rd man/fcPolygonGate-class.Rd man/fcEllipsoidGate-class.Rd man/as.data.table.gatingTemplate.Rd man/ocRectRefGate-class.Rd man/gate_quad_tmix.Rd man/show-fcFilter-method.Rd man/fcPolygonGate.Rd man/dims-gtMethod-method.Rd man/openCyto.Rd man/getGate-gatingTemplate-character-method.Rd man/fcTree.Rd man/show-boolMethod-method.Rd man/posteriors-fcFilter-ANY-method.Rd man/fcRectangleGate-class.Rd man/add_pop.Rd man/prior_flowClust.Rd man/isCollapse-gtMethod-method.Rd man/fcFilter-class.Rd man/gtMethod-class.Rd man/refGate-class.Rd man/priors-fcFilter-ANY-method.Rd man/show-gatingTemplate-method.Rd man/gating-methods.Rd man/prior_flowClust1d.Rd man/ocRectRefGate.Rd man/fcFilterList-class.Rd man/fcRectangleGate.Rd man/gate_quantile.Rd man/show-gtMethod-method.Rd man/ppMethod-class.Rd man/gate_quad_sequential.Rd man/openCyto.options.Rd man/gtSubsets-class.Rd man/gatingTemplate-class.Rd man/listgtMethods.Rd man/gating-gtMethod-GatingSet-method.Rd man/prior_kmeans.Rd man/registerPlugins.Rd man/flowClust1d.Rd man/groupBy-gtMethod-method.Rd man/boolMethod-class.Rd man/ppMethod-gatingTemplate-character-method.Rd man/isPolyfunctional.Rd man/dummyMethod-class.Rd man/toggle.helperGates.Rd man/polyFunctions-class.Rd man/names-gtPopulation-method.Rd man/ocRectangleGate-class.Rd man/plot-fcTree-character-method.Rd man/add.Rd man/gate_mindensity2.Rd man/templateGen.Rd man/fcFilterList.Rd man/preprocessing-ppMethod-GatingSet-method.Rd man/getGate-fcTree-character-method.Rd man/getNodes-fcTree-method.Rd man/gate_tail.Rd man/names-gtMethod-method.Rd
build/vignette.rds
tests/testthat.R tests/testthat/gating-testSuite.R tests/testthat/test-template-parsing.R tests/testthat/test-negated-gating.R tests/testthat/test_gating_functions.R
tests/testthat/gatingResults.rds
tests/testthat/test-misc.R tests/testthat/helper-expectRes.R tests/testthat/test-pluginFramework.R
tests/testthat/expectResults.rds
openCyto documentation built on May 2, 2018, 3:26 a.m.