Files in openCyto
Hierarchical Gating Pipeline for flow cytometry data

DESCRIPTION
README.md
NAMESPACE
.travis.yml
inst/NEWS
inst/CITATION
inst/doc/openCytoVignette.html
inst/doc/HowToAutoGating.R inst/doc/HowToWriteCSVTemplate.R
inst/doc/HowToAutoGating.html
inst/doc/HowToWriteCSVTemplate.Rmd inst/doc/HowToAutoGating.Rmd inst/doc/openCytoVignette.Rmd
inst/doc/HowToWriteCSVTemplate.html
inst/doc/openCytoVignette.R
inst/extdata/gating_template/bcell.csv
inst/extdata/gating_template/ICS_080.csv
inst/extdata/gating_template/tcell.csv
inst/extdata/gating_template/ITN_Newell.csv
inst/extdata/gating_template/treg.csv
inst/extdata/gating_template/ICS.csv
vignettes/HowToWriteCSVTemplate.Rmd vignettes/HowToAutoGating.Rmd vignettes/openCytoVignette.Rmd
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-7-2.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-8-2.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-9-1.png
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vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-12-1.png
vignettes/HowToAutoGating_files/figure-html/unnamed-chunk-8-1.png
R/unlockNamespace.R R/fcTree-methods.R R/zzz.R R/tautString.R R/coerce.R R/bayes-flowClust.R R/gating-methods.R R/fcFilter-methods.R R/RcppExports.R R/functions.R R/add_pop.R R/gtPopulation-methods.R R/pluginFramework.R R/AllClasses.R R/gatingTemplate-methods.R R/remove_pop.R R/toggle.helperGates.R R/gtMethod-methods.R R/fcFilterList-methods.R R/csvTemplate-parser.R R/mindensity2.R R/gating-functions.R R/add.R R/wrapper-functions.R R/as.data.table.R R/preprocessing-method.R
src/rQuantile.cpp
src/tautstring.cpp
src/kMedDP.h
src/kMedDP.cpp
src/fill_SMAWK.cpp
src/dynamic_prog.cpp
src/singleDip.cpp
src/cpPmden.cpp
src/tsGates.cpp
src/RcppExports.cpp
src/cppdip.cpp
src/misc.cpp
src/within_cluster.h
src/faust.h
src/getTautStringApprox.cpp
src/kkuiper.cpp
src/Makevars
src/cppApprox.cpp
src/medianAbsoluteDeviation.cpp
src/unlockNamespace.c
src/local_density.cpp
man/gt_get_children.Rd man/prior_flowclust.Rd man/plot-fcFilterList-ANY-method.Rd man/gate_mindensity.Rd man/gt_list_methods.Rd man/gs_add_gating_method.Rd man/fcTree-class.Rd man/gtPopulation-class.Rd man/plot-gatingTemplate-missing-method.Rd man/parameters-gtMethod-method.Rd man/openCyto-deprecated.Rd man/fcEllipsoidGate.Rd man/fcPolygonGate-class.Rd man/fcEllipsoidGate-class.Rd man/as.data.table.gatingTemplate.Rd man/ocRectRefGate-class.Rd man/gate_quad_tmix.Rd man/tautstring.Rd man/gate_flowclust_2d.Rd man/show-fcFilter-method.Rd man/fcPolygonGate.Rd man/register_plugins.Rd man/dims-gtMethod-method.Rd man/openCyto.Rd man/gh_generate_template.Rd man/fcTree.Rd man/show-boolMethod-method.Rd man/gs_add_gating_method_init.Rd man/posteriors-fcFilter-ANY-method.Rd man/fcRectangleGate-class.Rd man/isCollapse-gtMethod-method.Rd man/fcFilter-class.Rd man/gtMethod-class.Rd man/refGate-class.Rd man/priors-fcFilter-ANY-method.Rd man/show-gatingTemplate-method.Rd man/gt_toggle_helpergates.Rd man/ocRectRefGate.Rd man/fcFilterList-class.Rd man/fcRectangleGate.Rd man/gt_gating.Rd man/gs_remove_gating_method.Rd man/gate_quantile.Rd man/gt_get_nodes.Rd man/show-gtMethod-method.Rd man/ppMethod-class.Rd man/gate_quad_sequential.Rd man/openCyto.options.Rd man/gtSubsets-class.Rd man/gate_flowclust_1d.Rd man/gt_get_gate.Rd man/gatingTemplate-class.Rd man/groupBy-gtMethod-method.Rd man/gt_get_parent.Rd man/boolMethod-class.Rd man/ppMethod-gatingTemplate-character-method.Rd man/dummyMethod-class.Rd man/polyFunctions-class.Rd man/names-gtPopulation-method.Rd man/ocRectangleGate-class.Rd man/plot-fcTree-character-method.Rd man/add.Rd man/gate_mindensity2.Rd man/fcFilterList.Rd man/preprocessing-ppMethod-GatingSet-method.Rd man/getGate-fcTree-character-method.Rd man/getNodes-fcTree-method.Rd man/gate_tail.Rd man/names-gtMethod-method.Rd man-roxygen/template-depr_pkg.R man-roxygen/template-depr_fun.R
build/vignette.rds
tests/testthat.R tests/testthat/gating-testSuite.R tests/testthat/test-add-remove-pop.R tests/testthat/test-template-parsing.R tests/testthat/test-negated-gating.R tests/testthat/test-refGate-gating.R tests/testthat/test_gating_functions.R
tests/testthat/gatingResults.rds
tests/testthat/test-polyfunction.R tests/testthat/test-misc.R tests/testthat/helper-expectRes.R tests/testthat/test-pluginFramework.R
tests/testthat/expectResults.rds
openCyto documentation built on Oct. 31, 2019, 3:26 a.m.