plot-gatingTemplate-missing-method: plot the gating scheme

In openCyto: Hierarchical Gating Pipeline for flow cytometry data

Description

plot the gating scheme using Rgraphviz

Usage

## S4 method for signature 'gatingTemplate,missing'
plot(x, y, ...)

Arguments

x	gatingTemplate object
y	either character specifying the root node which can be used to visualize only the subgraph or missing which display the entire gating scheme
...	other arguments graphAttr, nodeAttr: graph rendering attributes passed to renderGraph showRef logical: whether to display the reference gates. Sometime it maybe helpful to hide all those reference gates which are not the cell population of interest and used primarily for generating other population nodes.

Examples

## Not run: 
gt <- gatingTemplate(system.file("extdata/gating_template/tcell.csv",package = "openCyto"))
plot(gt) #plot entire tree
plot(gt, "lymph") #only plot the subtree rooted from "lymph"

## End(Not run)

openCyto documentation built on Nov. 8, 2020, 5:40 p.m.