Man pages for openPrimeR
Multiplex PCR Primer Design and Analysis

AnalysisStatsPrimer Analysis Statistics.
check_cvg_constraintsEvaluation of Coverage Constraints.
create_report-list-list-methodCreation of a PDF Report for Primer Comparison.
create_report-Primers-Templates-methodCreation of a PDF report.
DataData Sets.
filterLimits-methodsGetter for Filtering Constraint Limits.
filters-methodsGetter for Filtering Constraints.
get_cvg_stats-list-methodCoverage Statistics for Multiple Primer Sets.
get_cvg_stats-Primers-methodCoverage Statistics of a Primer Set.
InputInput Functionalities.
openPrimeR-packageMultiplex PCR Primer Design and Analysis.
OutputOutput Functionalities.
plot_constraint_deviation-list-methodPlot of Constraint Deviations for Multiple Primer Sets.
plot_constraint_deviation-Primers-methodPlot of Constraint Deviations for a Single Primer Set.
plot_constraint_fulfillment-list-methodComparison of Evaluation Results.
plot_constraint_fulfillment-Primers-methodOverview of Constraint Fulfillment.
plot_constraint-list-methodBoxplot for Comparing Constraints.
plot_constraint-Primers-methodHistogram of Constraint Values.
plot_cvg_constraints-list-methodPlot for Comparing Primer Coverage Constraints.
plot_cvg_constraints-Primers-methodHistogram of Coverage Constraints.
plot_primer_binding_regions-list-list-methodPlot of Primer Binding Regions for Multiple Sets.
plot_primer_binding_regions-Primers-Templates-methodPlot of Primer Binding Regions for a Single Primer Set.
plot_primer_cvg-list-list-methodPlot Multiple Primer Coverages.
plot_primer_cvg-Primers-Templates-methodPlot Individual Primer Coverage.
PlotsPlotting Functions.
plot_template_cvg-list-list-methodTemplates Coverage for Multiple Primer Sets.
plot_template_cvg-Primers-Templates-methodBar Plot of Template Coverage.
PrimerDesignPrimer Design Functionalities.
PrimerEvalPrimer Evaluation.
Primers-methodS4 cbind for Primers.
runTutorialThe openPrimeR Tutorial.
ScoringScoring Functions.
SettingsSettings Functionalities.
TemplatesFunctionsTemplate Functionalities.
Templates-methodS4 cbind for Templates.
openPrimeR documentation built on Oct. 31, 2019, 10:24 a.m.