openPrimeR: Multiplex PCR Primer Design and Analysis

An implementation of methods for designing, evaluating, and comparing primer sets for multiplex PCR. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected. A Shiny app providing a user interface for the functionalities of this package is provided by the 'openPrimeRui' package.

Package details

AuthorMatthias Döring [aut, cre], Nico Pfeifer [aut]
Bioconductor views Software Technology
MaintainerMatthias Döring <[email protected]>
LicenseGPL-2
Version1.4.1
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("openPrimeR")

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openPrimeR documentation built on Nov. 11, 2018, 6 p.m.