plotConsProfiles: Plot marker consenses profiles.
In pRoloc: A unifying bioinformatics framework for spatial proteomics

Description Usage Arguments Value Author(s) Examples

The function plots marker consensus profiles obtained from mrkConsProfile

1	plotConsProfiles(object, order = NULL, plot = TRUE)

`object`	A `matrix` containing marker consensus profiles as output from `mrkConsProfiles()`.
`order`	Order for markers (optional).
`plot`	A `logical(1)` defining whether the heatmap should be plotted. Default is `TRUE`.

Invisibly returns ggplot2 object.

Tom Smith

library("pRolocdata")
data(E14TG2aS1)
hc <- mrkHClust(E14TG2aS1, plot = FALSE)
mm <- getMarkerClasses(E14TG2aS1)
ord <- levels(factor(mm))[order.dendrogram(hc)]
fmat <- mrkConsProfiles(E14TG2aS1)
plotConsProfiles(fmat, order = ord)