API for phemd
Phenotypic EMD for comparison of single-cell samples

Global functions
GDM Man page
GDM<- Man page
GDM<-,Phemd-method Man page
Phemd Man page
Phemd,ANY,ANY-method Man page
Phemd,character,ANY-method Man page
Phemd-class Man page
Phemd-methods Man page
aggregateSamples Man page
all_expn_data Man page
all_genes Man page
assignCellClusterNearestNode Man page
batchIDs Man page
batchIDs<- Man page
batchIDs<-,Phemd-method Man page
bindSeuratObj Man page
celltypeFreqs Man page
celltypeFreqs<- Man page
celltypeFreqs<-,Phemd-method Man page
clusterIndividualSamples Man page
compareSamples Man page
createDataObj Man page
drawColnames45 Man page
embedCells Man page
gaussianffLocal Man page
generateGDM Man page
getArithmeticCentroids Man page
getCellYield Man page
getSampleCelltypeFreqs Man page
getSampleHistsByCluster Man page
getSampleSizes Man page
groupSamples Man page
heatmap_genes Man page
identifyCentroids Man page
monocleInfo Man page
monocleInfo<- Man page
monocleInfo<-,Phemd-method Man page
orderCellsMonocle Man page
plotCellYield Man page
plotEmbeddings Man page
plotGroupedSamplesDmap Man page
plotHeatmaps Man page
plotSummaryHistograms Man page
pooledCells Man page
pooledCells<- Man page
pooledCells<-,Phemd-method Man page
printClusterAssignments Man page
rawExpn Man page
rawExpn<- Man page
rawExpn<-,Phemd-method Man page
removeTinySamples Man page
retrieveRefClusters Man page
sNames Man page
selectFeatures Man page
selectMarkers Man page
selectMarkers<- Man page
selectMarkers<-,Phemd-method Man page
selected_genes Man page
seuratInfo Man page
seuratInfo<- Man page
seuratInfo<-,Phemd-method Man page
snames_data Man page
subsampledBool Man page
subsampledBool<- Man page
subsampledBool<-,Phemd-method Man page
subsampledIdx Man page
subsampledIdx<- Man page
subsampledIdx<-,Phemd-method Man page
phemd documentation built on May 10, 2019, 2:01 a.m.