removeTinySamples: Remove samples with too few cells
In phemd: Phenotypic EMD for comparison of single-cell samples

Removes samples from Phemd that have fewer cells than min_sz

1	removeTinySamples(obj, min_sz = 20)

`obj`	'Phemd' object containing raw expression data and associated metadata
`min_sz`	Minimum number of cells in each sample to be retained

Note: If used, this function must be called before (and not after) the aggregateSamples function is called

'Phemd' object containing raw multi-sample expression data and associated metadata (same as input minus removed samples)

1 2	my_phemdObj <- createDataObj(all_expn_data, all_genes, as.character(snames_data)) my_phemdObj_lg <- removeTinySamples(my_phemdObj, 10) #removes samples with fewer than 10 cells

phemd documentation built on Nov. 8, 2020, 8:15 p.m.

phemd index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description