plrs: Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

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The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).

Author
Gwenael G.R. Leday
Date of publication
None
Maintainer
Gwenael G.R. Leday to <gleday@few.vu.nl>
License
GPL (>=2.0)
Version
1.14.0

View on Bioconductor

Man pages

criteria
Compute AIC, AICC, BIC and OSAIC for a given 'plrs' model.
modify.conf
Modify the configuration (of calls) of the plrs model
neveCN17
Copy number for chromosome 17.
neveGE17
mRNA expression for chromosome 17.
plot-methods
Plot functions in package 'plrs'
plrs
Fit a (constrained) piecewise linear regression spline
plrs.cb
Uniform confidence bands (CB) for plrs models
plrs-class
Class 'plrs'
plrs-package
Piecewise Linear Regression Splines (PLRS) for the...
plrs.select
Model selection
plrs.select-class
Class 'plrs.select'
plrs.series
Fit plrs models for a series of arrays.
plrs.series-class
Class 'plrs.series'
plrs.sim
Simulation of a plrs model
plrs.test
Likelihood ratio test for a 'plrs' model
predict.plrs
Predict method for 'plrs' models

Files in this package

plrs/DESCRIPTION
plrs/NAMESPACE
plrs/R
plrs/R/AllClasses.r
plrs/R/AllGenerics.r
plrs/R/Bmat.r
plrs/R/convertToTime.r
plrs/R/criteria.r
plrs/R/estimateKnots.r
plrs/R/make.mat.constr.r
plrs/R/modify.conf.r
plrs/R/plot.plrs.r
plrs/R/plrs-methods.r
plrs/R/plrs.cb.r
plrs/R/plrs.fit.r
plrs/R/plrs.r
plrs/R/plrs.select-methods.r
plrs/R/plrs.select.r
plrs/R/plrs.series-methods.r
plrs/R/plrs.series.r
plrs/R/plrs.sim.r
plrs/R/plrs.submodels.r
plrs/R/plrs.test.r
plrs/R/predict.plrs.r
plrs/R/quantileBetabar.r
plrs/R/respCI.r
plrs/build
plrs/build/vignette.rds
plrs/data
plrs/data/neveCN17.RData
plrs/data/neveGE17.RData
plrs/inst
plrs/inst/doc
plrs/inst/doc/plrs_vignette.R
plrs/inst/doc/plrs_vignette.Rnw
plrs/inst/doc/plrs_vignette.pdf
plrs/man
plrs/man/criteria.Rd
plrs/man/modify.conf.Rd
plrs/man/neveCN17.Rd
plrs/man/neveGE17.Rd
plrs/man/plot-methods.Rd
plrs/man/plrs-class.Rd
plrs/man/plrs-package.Rd
plrs/man/plrs.Rd
plrs/man/plrs.cb.Rd
plrs/man/plrs.select-class.Rd
plrs/man/plrs.select.Rd
plrs/man/plrs.series-class.Rd
plrs/man/plrs.series.Rd
plrs/man/plrs.sim.Rd
plrs/man/plrs.test.Rd
plrs/man/predict.plrs.Rd
plrs/vignettes
plrs/vignettes/mybib.bib
plrs/vignettes/plrs_vignette.Rnw