plrs: Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).

AuthorGwenael G.R. Leday
Date of publicationNone
MaintainerGwenael G.R. Leday to <gleday@few.vu.nl>
LicenseGPL (>=2.0)
Version1.14.0

View on Bioconductor

Functions

coef,plrs-method Man page
criteria Man page
criteria,plrs-method Man page
effects,plrs-method Man page
fitted,plrs-method Man page
knots,plrs-method Man page
model.matrix,plrs-method Man page
modify.conf Man page
neveCN17 Man page
neveGE17 Man page
plot,ANY Man page
plot-methods Man page
plot.plrs Man page
plot,plrs,ANY-method Man page
plot,plrs.select,ANY-method Man page
plrs Man page
plrs,ANY Man page
plrs.cb Man page
plrs-class Man page
plrs-package Man page
plrs.select Man page
plrs.select,ANY Man page
plrs.select-class Man page
plrs.series Man page
plrs.series-class Man page
plrs.sim Man page
plrs.test Man page
predict.plrs Man page
predict,plrs-method Man page
print,plrs-method Man page
print,plrs.select-method Man page
print,plrs.series-method Man page
residuals,plrs-method Man page
show,plrs-method Man page
show,plrs.select-method Man page
show,plrs.series-method Man page
summary,plrs-method Man page
summary,plrs.select-method Man page
summary,plrs.series-method Man page

Files

plrs/DESCRIPTION
plrs/NAMESPACE
plrs/R
plrs/R/AllClasses.r
plrs/R/AllGenerics.r
plrs/R/Bmat.r
plrs/R/convertToTime.r
plrs/R/criteria.r
plrs/R/estimateKnots.r
plrs/R/make.mat.constr.r
plrs/R/modify.conf.r
plrs/R/plot.plrs.r
plrs/R/plrs-methods.r
plrs/R/plrs.cb.r
plrs/R/plrs.fit.r
plrs/R/plrs.r
plrs/R/plrs.select-methods.r
plrs/R/plrs.select.r
plrs/R/plrs.series-methods.r
plrs/R/plrs.series.r
plrs/R/plrs.sim.r
plrs/R/plrs.submodels.r
plrs/R/plrs.test.r
plrs/R/predict.plrs.r
plrs/R/quantileBetabar.r
plrs/R/respCI.r
plrs/build
plrs/build/vignette.rds
plrs/data
plrs/data/neveCN17.RData
plrs/data/neveGE17.RData
plrs/inst
plrs/inst/doc
plrs/inst/doc/plrs_vignette.R
plrs/inst/doc/plrs_vignette.Rnw
plrs/inst/doc/plrs_vignette.pdf
plrs/man
plrs/man/criteria.Rd plrs/man/modify.conf.Rd plrs/man/neveCN17.Rd plrs/man/neveGE17.Rd plrs/man/plot-methods.Rd plrs/man/plrs-class.Rd plrs/man/plrs-package.Rd plrs/man/plrs.Rd plrs/man/plrs.cb.Rd plrs/man/plrs.select-class.Rd plrs/man/plrs.select.Rd plrs/man/plrs.series-class.Rd plrs/man/plrs.series.Rd plrs/man/plrs.sim.Rd plrs/man/plrs.test.Rd plrs/man/predict.plrs.Rd
plrs/vignettes
plrs/vignettes/mybib.bib
plrs/vignettes/plrs_vignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.