plot-methods: Plot functions in package 'plrs'

In plrs: Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression

Description

Methods plot in package 'plrs'

Usage

## S3 method for class 'plrs'
plot(x, col.line = "black", col.pts = c("red", "blue","green2", "green4"),
col.cb = "yellow", xlim = c(floor(min(x@data$cghseg)),ceiling(max(x@data$cghseg))),
ylim = c(floor(min(x@data$expr)),ceiling(max(x@data$expr))),
pch = 16, lwd=4, cex = 1.2, xlab="", ylab="", main = "",                      
add = FALSE, lty = 1, lin = FALSE, ...)

Arguments

x	An object of class plrs-class or plrs.select-class
col.line	Color of the fitted line
col.pts	Vector of length 4, for colors associated with each state
col.cb	Color for the confidence band
xlim	The x limits of the plot
ylim	The y limits of the plot
pch	See par
lwd	See par
cex	See par
xlab	Title of the x-axis
ylab	Title of the y-axis
main	Main title for the plot
add	If the plot should be added to the current device. Default is FALSE
lty	See par
lin	Logical. Whether the simple linear model should also be plotted
...	Other arguments, see par

Details

plot.plrs plots the observed points, the fitted line and potentially the confidence band.

Methods

signature(x = "plrs")

Plot observed points and the fitted line

signature(x = "plrs.select")

Plot observed points and the fitted line of the selected model.

Author(s)

Gwenael G.R. Leday [e-mail]

plrs documentation built on April 28, 2020, 6:09 p.m.