plw: Probe level Locally moderated Weighted t-tests.

Probe level Locally moderated Weighted median-t (PLW) and Locally Moderated Weighted-t (LMW).

Author
Magnus Astrand
Date of publication
None
Maintainer
Magnus Astrand <magnus.astrand@astrazeneca.com>
License
GPL-2
Version
1.34.0

View on Bioconductor

Man pages

AffySpikeU95Subset
Spike-in data
estimateMVbeta
Zero mean multivariate t-dist. with covariate dependent...
estimateSigma
Fit zero mean multivariate t-distribution, known df
estimateSigmaMV
Fit zero mean multivariate t-distribution
estimateSigmaMVbeta
Zero mean multivariate t-dist. with covariate dependent...
getKnots
Spline-knots for plw and lmw
HowToPLW
View HowToPLW
lmw
Locally Moderated Weighted-t.
logitT
logit-t and t-test by row
plw
Probe level Locally moderated Weighted median-t.
plw-package
plw
scaleParameterPlot
Scale parameter plotted against mean intensity
statByIndex
Computes statistics by index or by row
topRankSummary
Return or plots analysis result for top ranking or selected...
varHistPlot
Variance histogram and density

Files in this package

plw/DESCRIPTION
plw/NAMESPACE
plw/R
plw/R/PLWandLMW.R
plw/R/SpecialFunctions.R
plw/R/logitT.R
plw/R/zzz.R
plw/build
plw/build/vignette.rds
plw/data
plw/data/AffySpikeU95Subset.RData
plw/inst
plw/inst/CITATION
plw/inst/doc
plw/inst/doc/HowToPLW.R
plw/inst/doc/HowToPLW.Rnw
plw/inst/doc/HowToPLW.pdf
plw/man
plw/man/AffySpikeU95Subset.Rd
plw/man/HowToPLW.Rd
plw/man/estimateMVbeta.Rd
plw/man/estimateSigma.Rd
plw/man/estimateSigmaMV.Rd
plw/man/estimateSigmaMVbeta.Rd
plw/man/getKnots.Rd
plw/man/lmw.Rd
plw/man/logitT.Rd
plw/man/plw-package.Rd
plw/man/plw.Rd
plw/man/scaleParameterPlot.Rd
plw/man/statByIndex.Rd
plw/man/topRankSummary.Rd
plw/man/varHistPlot.Rd
plw/src
plw/src/SpecialFunctions.c
plw/src/SpecialOptim.c
plw/vignettes
plw/vignettes/HowToPLW.Rnw