Files in preciseTAD

preciseTAD: A machine learning framework for precise TAD boundary prediction

README.md

NEWS

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/arrowhead_gm12878_5kb.rda

data/tfbsList.rda

R/TADrandomForest.R R/binary_func.R R/TADrfe.R R/distance_func.R

R/sysdata.rda

R/bedToGRangesList.R R/arrowhead_gm12878_5kb.R R/juicer_func.R R/preciseTAD.R R/percent_func.R R/signal_func.R R/extractBoundaries.R R/tfbsList.R R/createTADdata.R R/count_func.R vignettes/preciseTAD.Rmd

vignettes/references.bib

vignettes/figures/fig1_vignette.png

vignettes/figures/fig2_vignette.png

man/arrowhead_gm12878_5kb.Rd man/signal_func.Rd man/preciseTAD.Rd man/bedToGRangesList.Rd man/juicer_func.Rd man/distance_func.Rd man/createTADdata.Rd man/percent_func.Rd man/TADrandomForest.Rd man/tfbsList.Rd man/TADrfe.Rd man/binary_func.Rd man/count_func.Rd man/extractBoundaries.Rd

man/figures/README-pressure-1.png

tests/testthat.R tests/testthat/test_juicer_func.R tests/testthat/test_TADrfe.R tests/testthat/test_createTADdata.R tests/testthat/test_TADrandomForest.R tests/testthat/test_bedToGRangesList.R tests/testthat/test_preciseTAD.R tests/testthat/test_extractBoundaries.R inst/doc/preciseTAD.Rmd

inst/doc/preciseTAD.html

inst/doc/preciseTAD.R

inst/extdata/Gm12878-Nfya-Sydh.bed

inst/extdata/Gm12878-Yy1-Sydh.bed

preciseTAD documentation built on Nov. 8, 2020, 6:51 p.m.