proActiv
Estimate Promoter Activity from RNA-Seq data

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proActiv: Estimate Promoter Activity from RNA-Seq data
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Files in proActiv
Estimate Promoter Activity from RNA-Seq data

README.md
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
data/promoterAnnotation.gencode.v34.subset.rda
R/PromoterAnnotation-class.R R/proActiv.R R/annotation-data-helper.R R/reexports.R R/junction-read-count.R R/plot-proActiv.R R/data.R R/estimate-promoter-activity.R R/annotation-data.R vignettes/proActiv.Rmd man/plotPromoters.Rd man/reexports.Rd man/calculateJunctionReadCounts.Rd man/PromoterAnnotation-class.Rd man/preparePromoterAnnotation.Rd man/promoterAnnotation.gencode.v34.subset.Rd man/getAbsolutePromoterActivity.Rd man/normalizePromoterReadCounts.Rd man/proActiv.Rd man/getRelativePromoterActivity.Rd man/calculatePromoterReadCounts.Rd man/getGeneExpression.Rd
man/figures/proActiv_design.png
man/figures/proActiv_logoName.png
man/figures/proActiv_name.png
tests/testthat.R tests/testthat/test_proActiv.R tests/testthat/test_annotation-data.R tests/testthat/test_plot-proActiv.R
tests/figs/deps.txt
tests/figs/plotpromoters/plotpromoters.svg
inst/CITATION
inst/doc/proActiv.html
inst/doc/proActiv.R inst/doc/proActiv.Rmd
inst/extdata/vignette/junctions/SGNEx_HepG2_Illumina_replicate2-run1.subset.SJ.out.tab.gz
inst/extdata/vignette/junctions/SGNEx_HepG2_Illumina_replicate5-run1.subset.SJ.out.tab.gz
inst/extdata/vignette/junctions/SGNEx_HepG2_Illumina_replicate4-run1.subset.SJ.out.tab.gz
inst/extdata/vignette/junctions/SGNEx_A549_Illumina_replicate3-run1.subset.SJ.out.tab.gz
inst/extdata/vignette/junctions/SGNEx_A549_Illumina_replicate5-run1.subset.SJ.out.tab.gz
inst/extdata/vignette/junctions/SGNEx_A549_Illumina_replicate1-run1.subset.SJ.out.tab.gz
inst/extdata/vignette/annotations/gencode.v34.annotation.rap1gap.sqlite
inst/extdata/vignette/annotations/exonsBy.rap1gap.rds
inst/extdata/vignette/annotations/gencode.v34.annotation.subset.gtf.gz
inst/extdata/vignette/annotations/gencode.v34.annotation.subset.sqlite
inst/extdata/testdata/bam/SGNEx_A549_Illumina_replicate1-run1_genome_subset.bam
inst/extdata/testdata/bam/SGNEx_MCF7_Illumina_replicate2-run1_genome_subset.bam
proActiv documentation built on Nov. 8, 2020, 8:14 p.m.

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