promoterAnnotation.gencode.v34.subset: Promoter annotation for Gencode.v34 (subset)
In proActiv: Estimate Promoter Activity from RNA-Seq data

Promoter annotation for Gencode.v34 (chr1:10,000,000 - 30,000,000)

1	promoterAnnotation.gencode.v34.subset

A PromoterAnnotation (S4 Class) object containing all promoter annotation objects for Gencode.v34 chr1:10,000,000-30,000,000. The object has 3 slots:

intronRanges: A GRanges object of 4,523 ranges corresponding to introns, annotated with the associated transcript.
promoterIdMapping: The id mapping between transcript names, promoter ids and gene ids for Gencode v34.
promoterCoordinates: A GRanges object of 1,380 ranges showing the tss coordinate for each promoter of Gencode v34 chr1:10,000,000-30,000,000, annotated with the associated gene id, coordinate of the 3' end of the first reduced exon, and intron id.