getAbsolutePromoterActivity: Prepare the absolute promoter activity table including the...

In proActiv: Estimate Promoter Activity from RNA-Seq data

Description

Prepare the absolute promoter activity table including the promoter and gene ids

Usage

getAbsolutePromoterActivity(
  junctionReadCounts,
  promoterAnnotation,
  log2 = TRUE,
  pseudocount = 1
)

Arguments

junctionReadCounts	Matrix of junction read counts (rows: promoters, cols: samples)
promoterAnnotation	A PromoterAnnotation object containing the intron ranges, promoter coordinates and the promoter id mapping
log2	Logical indicating whether log2 read counts should be used (default: TRUE) or not
pseudocount	Number to be used for log2 as pseudocount if log2 is TRUE

Value

data.frame of absolute promoter activity with promoter and gene ids

proActiv documentation built on Nov. 8, 2020, 8:14 p.m.