normalizePromoterReadCounts: Normalize promoter read counts using DESeq2
In proActiv: Estimate Promoter Activity from RNA-Seq data
Description
Usage
Arguments
Value
View source: R/junction-read-count.R
Description
Normalize promoter read counts using DESeq2
Usage
1
normalizePromoterReadCounts(promoterReadCounts)
Arguments
promoterReadCounts
A data.frame object. The number of junction reads
per promoter (rows) for each sample (cols)
Value
A data.frame object. The normalized number of junction reads per
promoter (rows) for each sample (cols) using DESeq2 counts function.
Requires 'DESeq2' package to be installed
proActiv documentation built on Nov. 8, 2020, 8:14 p.m.
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Description Usage Arguments Value
View source: R/junction-read-count.R
Description
Normalize promoter read counts using DESeq2
Usage
1 | normalizePromoterReadCounts(promoterReadCounts)
|
Arguments
promoterReadCounts |
A data.frame object. The number of junction reads per promoter (rows) for each sample (cols) |
Value
A data.frame object. The normalized number of junction reads per promoter (rows) for each sample (cols) using DESeq2 counts function. Requires 'DESeq2' package to be installed
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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