getAttributesTime: Get time values for given columns in a clinical dataset

In psichomics: Graphical Interface for Alternative Splicing Quantification, Analysis and Visualisation

Description

Get time values for given columns in a clinical dataset

Usage

getAttributesTime(
  clinical,
  event,
  timeStart,
  timeStop = NULL,
  followup = "days_to_last_followup"
)

Arguments

clinical	Data frame: clinical data
event	Character: name of column containing time of the event of interest
timeStart	Character: name of column containing starting time of the interval or follow up time
timeStop	Character: name of column containing ending time of the interval (only relevant for interval censoring)
followup	Character: name of column containing follow up time

Value

Data frame containing the time for the given columns

See Also

Other functions to analyse survival: assignValuePerSubject(), labelBasedOnCutoff(), optimalSurvivalCutoff(), plotSurvivalCurves(), plotSurvivalPvaluesByCutoff(), processSurvTerms(), survdiffTerms(), survfit.survTerms(), testSurvival()

Examples

df <- data.frame(followup=c(200, 300, 400), death=c(NA, 300, NA))
rownames(df) <- paste("subject", 1:3)
getAttributesTime(df, event="death", timeStart="death", followup="followup")

psichomics documentation built on Nov. 8, 2020, 5:44 p.m.