performICA: Perform independent component analysis after processing...

Description Usage Arguments Value See Also Examples

View source: R/analysis_dimReduction_ica.R

Description

Perform independent component analysis after processing missing values

Usage

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performICA(
  data,
  n.comp = min(5, ncol(data)),
  center = TRUE,
  scale. = FALSE,
  missingValues = round(0.05 * nrow(data)),
  alg.typ = c("parallel", "defaltion"),
  fun = c("logcosh", "exp"),
  alpha = 1,
  ...
)

Arguments

data

an optional data frame (or similar: see model.frame) containing the variables in the formula formula. By default the variables are taken from environment(formula).

n.comp

number of components to be extracted

center

a logical value indicating whether the variables should be shifted to be zero centered. Alternately, a vector of length equal the number of columns of x can be supplied. The value is passed to scale.

scale.

a logical value indicating whether the variables should be scaled to have unit variance before the analysis takes place. The default is FALSE for consistency with S, but in general scaling is advisable. Alternatively, a vector of length equal the number of columns of x can be supplied. The value is passed to scale.

missingValues

Integer: number of tolerated missing values per column to be replaced with the mean of the values of that same column

alg.typ

if alg.typ == "parallel" the components are extracted simultaneously (the default). if alg.typ == "deflation" the components are extracted one at a time.

fun

the functional form of the G function used in the approximation to neg-entropy (see ‘details’).

alpha

constant in range [1, 2] used in approximation to neg-entropy when fun == "logcosh"

...

Arguments passed on to fastICA::fastICA

Value

ICA result in a prcomp object

See Also

Other functions to analyse independent components: plotICA()

Examples

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psichomics documentation built on Nov. 8, 2020, 5:44 p.m.