Files in rMAT
R implementation from MAT program to normalize and analyze tiling arrays and ChIP-chip data.
cleanup
aclocal.m4
configure.ac
DESCRIPTION
.BBSoptions
NAMESPACE
configure
inst/doc/rMAT.pdf
inst/doc/rMAT.R
inst/doc/rMAT.Rnw
inst/extdata/Swr1WTIP_Short.CEL
inst/extdata/Sc03b_MR_v04_10000.bpmap
vignettes/README
vignettes/MyBedFile.bed
vignettes/rMAT.Rnw
scripts/Viewport.R
scripts/test.R
R/MATScore.R
R/ReadBPMAPHeader.R
R/SetMethods.R
R/BPMAPCelMerger.R
R/ReadBPMAPSeq.R
R/ReadBPMAPAllSeqHeader.R
R/NormalizeProbes.R
R/SetClasses.R
R/BPMAPCelParser.R
src/Rdefines.h
src/affy-base-types.h
src/DeclareAll.c
src/FileWriter.h
src/FileIO.cpp
src/Makevars.win
src/BARFileWriter.h
src/BARWriter.cpp
src/TagValuePair.h
src/BPMAPFileData.cpp
src/config.h.in
src/FileIO.h
src/BARFileData.cpp
src/NormalizeProbes.c
src/Makevars.in
src/BPMAPfunctions.cpp
src/BARFileWriter.cpp
src/BARFileData.h
src/BPMAPFileData.h
src/FileWriter.cpp
src/BARReader.cpp
man/MATScore.Rd
man/BPMAPCelParser.Rd
man/callEnrichedRegions.Rd
man/summary.Rd
man/tillingSet.Rd
man/ReadBPMAPAllSeqHeader.Rd
man/show.Rd
man/computeMATScore.Rd
man/NormalizeProbes.Rd
build/vignette.rds
