ribosomeProfilingQC: Ribosome Profiling Quality Control

Ribo-Seq (also named ribosome profiling or footprinting) measures translatome (unlike RNA-Seq, which sequences the transcriptome) by direct quantification of the ribosome-protected fragments (RPFs). This package provides the tools for quality assessment of ribosome profiling. In addition, it can preprocess Ribo-Seq data for subsequent differential analysis.

Package details

AuthorJianhong Ou [aut, cre] (<https://orcid.org/0000-0002-8652-2488>), Mariah Hoye [aut]
Bioconductor views Coverage GeneRegulation QualityControl RiboSeq Sequencing Visualization
MaintainerJianhong Ou <jianhong.ou@duke.edu>
LicenseGPL (>=3) + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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ribosomeProfilingQC documentation built on March 13, 2021, 2:01 a.m.