PAmotif: Metaplot of P site distribution
In ribosomeProfilingQC: Ribosome Profiling Quality Control
Description
Usage
Arguments
Value
Examples
Description
Metaplot of P site distribution in all the CDS aligned by
the start codon or stop codon.
Usage
1
Arguments
reads
Output of assignReadingFrame or shiftReadsByFrame.
genome
A BSgenome object.
plot
Plot the motif or not.
Value
A pcm object
Examples
1
2
3
4
pcs <- readRDS(system.file("extdata", "samplePc.rds",
package="ribosomeProfilingQC"))
library(BSgenome.Drerio.UCSC.danRer10)
#PAmotif(pcs, Drerio)
ribosomeProfilingQC documentation built on March 13, 2021, 2:01 a.m.
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Description Usage Arguments Value Examples
Description
Metaplot of P site distribution in all the CDS aligned by the start codon or stop codon.
Usage
1 |
Arguments
reads |
Output of assignReadingFrame or shiftReadsByFrame. |
genome |
A BSgenome object. |
plot |
Plot the motif or not. |
Value
A pcm object
Examples
1 2 3 4 | pcs <- readRDS(system.file("extdata", "samplePc.rds",
package="ribosomeProfilingQC"))
library(BSgenome.Drerio.UCSC.danRer10)
#PAmotif(pcs, Drerio)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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