plotTranscript: Plot reads P site abundance for a specific transcript
In ribosomeProfilingQC: Ribosome Profiling Quality Control
Description
Usage
Arguments
Value
Examples
View source: R/plotTranscript.R
Description
Plot the bundances of P site on a transcript.
Usage
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plotTranscript(
reads,
tx_name,
col = c(Frame_0 = "#009E73", Frame_1 = "#D55E00", Frame_2 = "#0072B2")
)
Arguments
reads
Output of assignReadingFrame
tx_name
Transcript names.
col
Colors for reading frames
Value
Invisible heights of the barplot.
Examples
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pcs <- readRDS(system.file("extdata", "samplePc.rds",
package="ribosomeProfilingQC"))
plotTranscript(pcs, c("ENSDART00000152562", "ENSDART00000054987"))
ribosomeProfilingQC documentation built on March 13, 2021, 2:01 a.m.
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Description Usage Arguments Value Examples
View source: R/plotTranscript.R
Description
Plot the bundances of P site on a transcript.
Usage
1 2 3 4 5 | plotTranscript(
reads,
tx_name,
col = c(Frame_0 = "#009E73", Frame_1 = "#D55E00", Frame_2 = "#0072B2")
)
|
Arguments
reads |
Output of assignReadingFrame |
tx_name |
Transcript names. |
col |
Colors for reading frames |
Value
Invisible heights of the barplot.
Examples
1 2 3 4 | pcs <- readRDS(system.file("extdata", "samplePc.rds",
package="ribosomeProfilingQC"))
plotTranscript(pcs, c("ENSDART00000152562", "ENSDART00000054987"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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