rqt-class: The rqt class

In rqt: rqt: utilities for gene-level meta-analysis

Description

This class stores parameters and results of the rtq algorithms

Slots

phenotype:

Phenotype (a vector of length N, where N - number of individuals).

genotype:

Genotype - an object of class SummarizedExperiment. Should contain one assay (matrix, N by M where N - number of individuals, M - number of genetic variants).

covariates:

data frame N by K where N - number of individuals, K - number of covariates)

results:

A list of two: test statistics (Q1, Q2, Q3), p-values (p1.Q1, p2.Q2, p3.Q3)

rqt documentation built on Nov. 8, 2020, 4:50 p.m.