scDatEx: Data: Toy example data

In scDD: Mixture modeling of single-cell RNA-seq data to identify genes with differential distributions

Description

Toy example data in SingleCellExperiment format for 500 genes to illustrate how to generate simulated data from example data using simulateSet.

Usage

data(scDatEx)

Format

An object of class SingleCellExperiment containing data for 500 genes for 142 samples (78 from condition 1 and 64 from condition 2). Condition labels (1 or 2) are stored in the colData slot. The assays slot contains both normcounts and counts for illustration, but these objects are identical.

Value

An RData object, see Format section for details

References

Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 2016 Oct 25;17(1):222. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1077-y

Examples

# load toy example data 
data(scDatEx) 

scDD documentation built on Nov. 8, 2020, 7:10 p.m.