testZeroes: testZeroes
In scDD: Mixture modeling of single-cell RNA-seq data to identify genes with differential distributions
Description
Usage
Arguments
Details
Value
Description
Test for a difference in the proportion of zeroes between conditions
for a specified set of genes
Usage
1
testZeroes(dat, cond, these = 1:nrow(dat))
Arguments
dat
Matrix of single cell expression data with genes in rows and
samples in columns.
cond
Vector of condition labels
these
vector of row numbers (gene numbers) to test for a difference
in the proportion of zeroes.
Details
Test for a difference in the proportion of zeroes between
conditions that is not explained by the
detection rate. Utilizes Bayesian logistic regression.
Value
Vector of FDR adjusted p-values
scDD documentation built on Nov. 8, 2020, 7:10 p.m.
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Description Usage Arguments Details Value
Description
Test for a difference in the proportion of zeroes between conditions for a specified set of genes
Usage
1 | testZeroes(dat, cond, these = 1:nrow(dat))
|
Arguments
dat |
Matrix of single cell expression data with genes in rows and samples in columns. |
cond |
Vector of condition labels |
these |
vector of row numbers (gene numbers) to test for a difference in the proportion of zeroes. |
Details
Test for a difference in the proportion of zeroes between conditions that is not explained by the detection rate. Utilizes Bayesian logistic regression.
Value
Vector of FDR adjusted p-values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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