validation: validation

Description Usage Arguments Value References

View source: R/Validation.R

Description

Draw validation plots to show that the simulated dataset emulates characteristics of observed dataset.

Usage

1
validation(MV, DEIndex, Zeropercent_Base, Simulated_Data, numGenes)

Arguments

MV

Mean and Variance matrix for observed data

DEIndex

Index for genes chosen to be DE (can be NULL)

Zeropercent_Base

Zero percentage for corresponding gene expression values

Simulated_Data

Simulated dataset

numGenes

numeric value for the number of genes to simulate

Value

Validation plots

References

Korthauer KD, Chu LF, Newton MA, Li Y, Thomson J, Stewart R, Kendziorski C. A statistical approach for identifying differential distributions in single-cell RNA-seq experiments. Genome Biology. 2016 Oct 25;17(1):222. https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-1077-y


scDD documentation built on Nov. 8, 2020, 7:10 p.m.