plotEgoNetwork: plotEgoNetwork

In scHOT: single-cell higher order testing

Description

the plotEgoNetwork function plots network graphs with edges coloured by weights in the network

Usage

plotEgoNetwork(
  scHOT,
  hubnode,
  network,
  weight = "higherOrderStatistic",
  subset = FALSE,
  thresh = NULL
)

Arguments

scHOT	a scHOT object
hubnode	is a character vector of node(s) to include as hub nodes
network	is an igraph network
weight	A string indicates the column name stored in scHOT_output slot that are used as the weights of the network
subset	is a logical asking if you should subset based on the weight (default FALSE)
thresh	is the subset weight threshold

Value

igraph object containing the network graphed. Produces an igraph plot

scHOT documentation built on Nov. 8, 2020, 5:06 p.m.