weightMatrix-set: Setter functions for scHOT objects
In scHOT: single-cell higher order testing
Description
Usage
Arguments
Value
Examples
Description
Setter functions for scHOT objects
Usage
1
weightMatrix(x) <- value
Arguments
x
A scHOT object
value
The value the slot should take
Value
A scHOT object
Examples
1
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library(SingleCellExperiment)
data(MOB_subset)
sce_MOB_subset <- MOB_subset$sce_MOB_subset
scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
assayName = "logcounts",
positionType = "spatial",
positionColData = c("x", "y"))
W <- spatialWeightMatrix(colData(scHOT_spatial)[,slot(scHOT_spatial, "positionColData")])
weightMatrix(scHOT_spatial) <- W
scHOT documentation built on Nov. 8, 2020, 5:06 p.m.
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Description Usage Arguments Value Examples
Description
Setter functions for scHOT objects
Usage
1 | weightMatrix(x) <- value
|
Arguments
x |
A scHOT object |
value |
The value the slot should take |
Value
A scHOT object
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | library(SingleCellExperiment)
data(MOB_subset)
sce_MOB_subset <- MOB_subset$sce_MOB_subset
scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
assayName = "logcounts",
positionType = "spatial",
positionColData = c("x", "y"))
W <- spatialWeightMatrix(colData(scHOT_spatial)[,slot(scHOT_spatial, "positionColData")])
weightMatrix(scHOT_spatial) <- W
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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