addVariable: Adding variables after the combination of contigs.

In scRepertoire: A toolkit for single-cell immune receptor profiling

Description

This function adds variables to the product of combineTCR() combineBCR() or expression2List() to be used in later visualizations. For each element, the function will add a column (labled by name) with the variable. The length of the variable paramater needs to match the length of the combined object.

Usage

addVariable(df, name = NULL, variables = NULL)

Arguments

df	The product of combineTCR() combineBCR() or expression2List().
name	The column header to add.
variables	The exact values to add to each element of the list.

Value

list of contigs with a new column (name).

Examples

x <- contig_list
combined <- combineTCR(x, rep(c("PX", "PY", "PZ"), each=2), 
rep(c("P", "T"), 3), cells ="T-AB")
combined <- addVariable(combined, name = "batch", variables = c(1,1,1,1,2,2))

scRepertoire documentation built on Nov. 8, 2020, 7 p.m.