scater: Single-Cell Analysis Toolkit for Gene Expression Data in R

A collection of tools for doing various analyses of single-cell RNA-seq gene expression data, with a focus on quality control and visualization.

Vignettes Man pages API and functions Files

Package details
Author	Davis McCarthy [aut], Kieran Campbell [aut], Aaron Lun [aut, ctb], Quin Wills [aut], Vladimir Kiselev [ctb], Alan O'Callaghan [ctb, cre]
Bioconductor views	Coverage DataImport DataRepresentation DimensionReduction GeneExpression ImmunoOncology Infrastructure Normalization Preprocessing QualityControl RNASeq Sequencing SingleCell Software Transcriptomics Visualization
Maintainer	Alan O'Callaghan <alan.ocallaghan@outlook.com>
License	GPL-3
Version	1.18.6
URL	http://bioconductor.org/packages/scater/
Package repository	View on Bioconductor
Installation	Install the latest version of this package by entering the following in R: `if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("scater")`