Files in scater

Single-Cell Analysis Toolkit for Gene Expression Data in R

R/plotHeatmap.R R/AllGenerics.R R/runColDataPCA.R R/plotColData.R R/batchCorrectedAverages.R R/utils_plotting.R R/retrieveFeatureInfo.R R/scater-pkg.R R/annotateBMFeatures.R R/SingleCellExperiment-methods.R R/retrieveCellInfo.R R/plotExplanatoryPCs.R R/utils_reddim.R R/ggsce.R R/AllClasses.R R/plotGroupedHeatmap.R R/multiplot.R R/plotHighestExprs.R R/reexports.R R/runUMAP.R R/getExplanatoryPCs.R R/plot_central.R R/plotReducedDim.R R/getVarianceExplained.R R/plotExplanatoryVariables.R R/plotExpression.R R/nexprs.R R/plotRLE.R R/runNMF.R R/plot_colours.R R/runMultiUMAP.R R/plotRowData.R R/plotDots.R R/runTSNE.R R/SCESet-methods.R R/runMDS.R R/plotScater.R R/plot_reddim.R R/runDiffusionMap.R R/plotPlatePosition.R R/defunct.R R/runPCA.R inst/doc/overview.Rmd inst/doc/overview.R tests/testthat.R tests/testthat/test-qc-plot.R tests/testthat/test-plot-heat.R tests/testthat/test-plot-scater.R tests/testthat/test-plot-dimred.R tests/testthat/test-red-dim.R tests/testthat/test-plot-utils.R tests/testthat/test-SingleCellExperiment-methods.R tests/testthat/setup.R tests/testthat/test-average.R tests/testthat/test-expl-var.R tests/testthat/test-plot-other.R tests/testthat/test-nexprs.R tests/testthat/test-plot-exprs.R vignettes/overview.Rmd man/plotExpression.Rd man/getVarianceExplained.Rd man/plotDots.Rd man/multiplot.Rd man/runUMAP.Rd man/runMultiUMAP.Rd man/reexports.Rd man/nexprs.Rd man/batchCorrectedAverages.Rd man/plotGroupedHeatmap.Rd man/getExplanatoryPCs.Rd man/runPCA.Rd man/runDiffusionMap.Rd man/defunct.Rd man/plotExplanatoryPCs.Rd man/plotColData.Rd man/plotExplanatoryVariables.Rd man/annotateBMFeatures.Rd man/runMDS.Rd man/plotScater.Rd man/plotRLE.Rd man/plotHighestExprs.Rd man/scater-pkg.Rd man/plotPlatePosition.Rd man/runNMF.Rd man/retrieveCellInfo.Rd man/plotReducedDim.Rd man/scater-plot-args.Rd man/accessors.Rd man/bootstraps.Rd man/plotHeatmap.Rd man/runTSNE.Rd man/retrieveFeatureInfo.Rd man/plot_reddim.Rd man/plotRowData.Rd man/SCESet.Rd man/toSingleCellExperiment.Rd man/runColDataPCA.Rd man/ggsce.Rd