Files in scruff
Single Cell RNA-Seq UMI Filtering Facilitator (scruff)
README.md
scruff documentation built on Feb. 13, 2021, 2 a.m.
NAMESPACE
DESCRIPTION
LICENSE
R/countUMI.R
R/alignRsubread.R
R/data.R
R/gview.R
R/demultiplex.R
R/scruffFunctions.R
R/scruff.R
R/rview.R
R/tenxBamqc.R
R/qcplots.R
inst/NEWS
inst/doc/scruff.Rmd
inst/doc/scruff.html
inst/doc/scruff.R
inst/extdata/vandenBrink_1h1_L001_R1_001.fastq.gz
inst/extdata/vandenBrink_1h1_L001_R2_001.fastq.gz
inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_5000.bam
inst/extdata/GRCm38_MT.gtf
inst/extdata/GRCm38_MT.fa
inst/extdata/SRR5167880_E18_20160930_Neurons_Sample_01_filtered_barcode.tsv
build/vignette.rds
tests/testthat.R
tests/testthat/testscruff.R
vignettes/scruff.Rmd
data/barcodeExample.rda
data/validCb.rda
data/cbtop10000.rda
data/bamExample.rda
data/sceExample.rda
man/scruff.Rd
man/gview.Rd
man/validCb.Rd
man/alignRsubread.Rd
man/rview.Rd
man/demultiplex.Rd
man/sceExample.Rd
man/barcodeExample.Rd
man/tenxBamqc.Rd
man/bamExample.Rd
man/countUMI.Rd
man/cbtop10000.Rd
man/qcplots.Rd
