Files in sevenC

Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

README.md

NAMESPACE

DESCRIPTION

build/vignette.rds

data/TFspecificModels.rda

data/motif.hg19.CTCF.chr22.cov.rda

data/cutoffBest10.rda

data/modelBest10Avg.rda

data/motif.hg19.CTCF.chr22.rda

data/motif.hg19.CTCF.rda

data/cutoffByTF.rda

R/prediction.R R/parseChIP-seq.R R/interaction.R R/sevenC.R R/parseInteractions.R R/data.R vignettes/sevenC.Rmd

vignettes/sevenC.bib

man/addMotifScore.Rd man/addCor.Rd man/motif.hg19.CTCF.Rd man/cutoffBest10.Rd man/modelBest10Avg.Rd man/cutoffByTF.Rd man/noZeroVar.Rd man/predLoops.Rd man/prepareCisPairs.Rd man/motif.hg19.CTCF.chr22.cov.Rd man/addCovCor.Rd man/slideMean.Rd man/addCovToGR.Rd man/getCisPairs.Rd man/parseLoopsRao.Rd man/addInteractionSupport.Rd man/parseLoopsTang.Rd man/addStrandCombination.Rd man/sevenC.Rd man/TFspecificModels.Rd man/motif.hg19.CTCF.chr22.Rd man/predLogit.Rd man/getOutOfBound.Rd tests/testthat.R tests/testthat/test-parseInteractions.R tests/testthat/test-parseChIP-seq.R tests/testthat/test-prediction.R tests/testthat/test-interaction.R

inst/NEWS

inst/CITATION

inst/doc/sevenC.Rmd inst/doc/sevenC.R

inst/doc/sevenC.html

inst/extdata/GM12878_HiCCUPS.chr22_1-30000000.loop.txt

inst/extdata/GM12878_Stat1.chr22_1-30000000.bigWig

inst/extdata/ChIA-PET_GM12878_Tang2015.chr22_1-30000000.clusters.txt

sevenC documentation built on Nov. 8, 2020, 5:35 p.m.