motif.hg19.CTCF.chr22.cov: CTCF motifs on human chromosome 22 with example coverage.
In sevenC: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Description
Usage
Format
See Also
Description
This dataset is the same as motif.hg19.CTCF.chr22 but with one
additional metadata colum, named "chip", holding ChIP-seq signals for all
motifs in a windows of 1000 bp around the motif center as
NumericList. The data is from a ChIP-seq experiment
for STAT1 in human GM12878 cells. The full bigWig file can be downloaded from
ENCODE (Dunham et al. 2012)
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeSydhTfbs/wgEncodeSydhTfbsGm12878Stat1StdSig.bigWig.
See motif.hg19.CTCF and motif.hg19.CTCF.chr22 for
a more details and the motif data set.
Usage
1
Format
An object of class GRanges of length 917.
See Also
motif.hg19.CTCF, motif.hg19.CTCF.chr22
sevenC documentation built on Nov. 8, 2020, 5:35 p.m.
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Description Usage Format See Also
Description
This dataset is the same as motif.hg19.CTCF.chr22 but with one
additional metadata colum, named "chip", holding ChIP-seq signals for all
motifs in a windows of 1000 bp around the motif center as
NumericList. The data is from a ChIP-seq experiment
for STAT1 in human GM12878 cells. The full bigWig file can be downloaded from
ENCODE (Dunham et al. 2012)
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeSydhTfbs/wgEncodeSydhTfbsGm12878Stat1StdSig.bigWig.
See motif.hg19.CTCF and motif.hg19.CTCF.chr22 for
a more details and the motif data set.
Usage
1 |
Format
An object of class GRanges of length 917.
See Also
motif.hg19.CTCF, motif.hg19.CTCF.chr22
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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