TFspecificModels: TF specific parameters for logistic regression in sevenC
In sevenC: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
Description
Usage
Format
See Also
Description
sevenC was trained on 124 TF ChIP-seq data sets from ENCODE. Specific
parameters are provided in this data set.
Usage
1
Format
A data.frame with 868 rows and 7 columns.
- TF
TF name used in ChIP-seq experiment.
- file_accession
File accession ID from ENCODE project
- term
Model term name. See modelBest10Avg for more
detials.
- estimate_mean
Mean parameter estimate in 10-fold cross-validation
- estimate_median
Median parameter estimate in 10-fold
cross-validation
- estimate_sd
Standard deviation of parameter estimate in 10-fold
cross-validation
See Also
sevenC documentation built on Nov. 8, 2020, 5:35 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format See Also
Description
sevenC was trained on 124 TF ChIP-seq data sets from ENCODE. Specific parameters are provided in this data set.
Usage
1 |
Format
A data.frame with 868 rows and 7 columns.
- TF
TF name used in ChIP-seq experiment.
- file_accession
File accession ID from ENCODE project
- term
Model term name. See
modelBest10Avgfor more detials.- estimate_mean
Mean parameter estimate in 10-fold cross-validation
- estimate_median
Median parameter estimate in 10-fold cross-validation
- estimate_sd
Standard deviation of parameter estimate in 10-fold cross-validation
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.