API for specL
specL - Prepare Peptide Spectrum Matches for Use in Targeted Proteomics
| Global functions | |
|---|---|
| .annotateProteinIDGrep | Source code |
| .convert_blib2psm | Source code |
| .convert_blib2psmInternal | Source code |
| .generate_swath_ion_library | Source code |
| .ionChargeState | Source code |
| .mascot2psmSet | Source code |
| .normalize_rt | Source code |
| .onAttach | Source code |
| .plot_ptm_ion | Source code |
| .retentiontimePlot | Source code |
| .retentiontimePlotFile | Source code |
| .swath_plot_ | Source code |
| .swath_q1q3_conflicts | Source code |
| BiblioSpec | Man page |
| MRM | Man page |
| SWATH | Man page |
| Skyline | Man page |
| annotate.protein_id | Man page Source code |
| bibliospec | Man page |
| cdsw | Man page Source code |
| genSwathIonLib | Man page Source code |
| generate.consensus | Man page |
| generate.consensus,specLSet-method | Man page |
| generateDynamicSwathWindow | Man page |
| getProteinPeptideTable | Man page |
| getProteinPeptideTable,specLSet-method | Man page |
| iRT | Man page |
| iRTpeptides | Man page |
| ionlibrary | Man page Man page |
| ionlibrary,specLSet-method | Man page Man page |
| irt | Man page |
| merge.specLSet | Man page |
| merge.specLSet,specLSet-method | Man page |
| ms1.p2069 | Man page |
| peptideStd | Man page |
| peptideStd.redundant | Man page |
| plot | Man page |
| plot,ANY-method | Man page |
| plot,specL-method | Man page |
| plot,specL-methods | Man page |
| plot,specLSet-method | Man page |
| plot,specLSet-methods | Man page |
| plot-methods | Man page |
| plot.psm | Man page |
| plot.psmSet | Man page |
| read.bibliospec | Man page Source code |
| rt.input | Man page |
| rt.input,specLSet-method | Man page |
| rt.normalized | Man page |
| rt.normalized,specLSet-method | Man page |
| show,ANY-method | Man page |
| show,specL-method | Man page |
| show,specLSet-method | Man page |
| show-methods | Man page |
| skyline | Man page |
| specL | Man page |
| specL-class | Man page |
| specLSet-class | Man page |
| summary,specLSet-method | Man page |
| summary.psmSet | Man page |
| swath | Man page |
| write.spectronaut | Man page |
| write.spectronaut,ANY-method | Man page |
| write.spectronaut,specL-method | Man page |
| write.spectronaut,specL-methods | Man page |
| write.spectronaut,specLSet-method | Man page |
| write.spectronaut,specLSet-methods | Man page |
