API for spliceR
Classification of alternative splicing and prediction of coding potential from RNA-seq data.
| Global functions | |
|---|---|
| CDSSet | Man page Source code |
| CDSSet-class | Man page |
| SpliceRList | Man page Source code |
| SpliceRList-class | Man page |
| annotatePTC | Man page Source code |
| conditions | Man page Source code |
| determineAStypeOverlap | Source code |
| determineLeftOverlappingAStype | Source code |
| determineNonOverlappingAStype | Source code |
| determineRightOverlappingAStype | Source code |
| dim.SpliceRList | Man page Source code |
| evaluateCounter | Source code |
| exons | Man page Source code |
| filterExpressedGenes | Source code |
| filterExpressedIso | Source code |
| filterIsoClassCode | Source code |
| filterOKGenes | Source code |
| filterOKIso | Source code |
| filterPTC | Source code |
| filterSigGenes | Source code |
| filterSigIso | Source code |
| filterSingleExonIsoAll | Source code |
| filterSingleIsoform | Source code |
| findIdenticalExons | Source code |
| findOverlap | Source code |
| findOverlappingExons | Source code |
| generateGTF | Man page Source code |
| getCDS | Man page Source code |
| getIntersectVennData | Source code |
| getMajorIsoCuffDB | Source code |
| getPreRNA | Source code |
| length.SpliceRList | Man page Source code |
| onAttach | Source code |
| preSpliceRFilter | Man page Source code |
| prepareCuff | Man page Source code |
| prepareCuffExample | Man page Source code |
| spliceR | Man page Source code |
| spliceRPlot | Man page Source code |
| topIsoShift | Man page Source code |
| totalNumberOfAS | Man page Source code |
| transcripts | Man page Source code |
