conditions: Returns sample condictions of an SpliceRList or an CuffSet...
In spliceR: Classification of alternative splicing and prediction of coding potential from RNA-seq data.
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Returns samples/condictions of an SpliceRList or an CuffSet object.
Usage
1
conditions(object)
Arguments
object
a SpliceRList object or a CuffSet object.
Details
This helper function returns the "conditions" slot of a SpliceRList, or the "sample" slot of a CuffSet.
Value
A character vector, giving the samples/conditions.
Author(s)
Kristoffer Vitting-Seerup, Johannes Waage
References
Vitting-Seerup K , Porse BT, Sandelin A, Waage J. (2014) spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. BMC Bioinformatics 15:81.
Examples
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#Load cufflinks example data
cuffDB <- prepareCuffExample()
conditions(cuffDB)
#Generate SpliceRList from cufflinks data
cuffDB_spliceR <- prepareCuff(cuffDB)
conditions(cuffDB_spliceR)
spliceR documentation built on May 2, 2018, 2:50 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Returns samples/condictions of an SpliceRList or an CuffSet object.
Usage
1 | conditions(object)
|
Arguments
object |
a |
Details
This helper function returns the "conditions" slot of a SpliceRList, or the "sample" slot of a CuffSet.
Value
A character vector, giving the samples/conditions.
Author(s)
Kristoffer Vitting-Seerup, Johannes Waage
References
Vitting-Seerup K , Porse BT, Sandelin A, Waage J. (2014) spliceR: an R package for classification of alternative splicing and prediction of coding potential from RNA-seq data. BMC Bioinformatics 15:81.
Examples
1 2 3 4 5 6 7 8 9 | #Load cufflinks example data
cuffDB <- prepareCuffExample()
conditions(cuffDB)
#Generate SpliceRList from cufflinks data
cuffDB_spliceR <- prepareCuff(cuffDB)
conditions(cuffDB_spliceR)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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