API for spliceR
Classification of alternative splicing and prediction of coding potential from RNA-seq data.

Global functions
CDSSet Man page Source code
CDSSet-class Man page
SpliceRList Man page Source code
SpliceRList-class Man page
annotatePTC Man page Source code
conditions Man page Source code
determineAStypeOverlap Source code
determineLeftOverlappingAStype Source code
determineNonOverlappingAStype Source code
determineRightOverlappingAStype Source code
dim.SpliceRList Man page Source code
evaluateCounter Source code
exons Man page Source code
filterExpressedGenes Source code
filterExpressedIso Source code
filterIsoClassCode Source code
filterOKGenes Source code
filterOKIso Source code
filterPTC Source code
filterSigGenes Source code
filterSigIso Source code
filterSingleExonIsoAll Source code
filterSingleIsoform Source code
findIdenticalExons Source code
findOverlap Source code
findOverlappingExons Source code
generateGTF Man page Source code
getCDS Man page Source code
getIntersectVennData Source code
getMajorIsoCuffDB Source code
getPreRNA Source code
length.SpliceRList Man page Source code
preSpliceRFilter Man page Source code
prepareCuff Man page Source code
prepareCuffExample Man page Source code
spliceR Man page Source code
spliceRPlot Man page Source code
topIsoShift Man page Source code
totalNumberOfAS Man page Source code
transcripts Man page Source code
spliceR documentation built on Nov. 17, 2017, 10 a.m.