Man pages for spliceR
Classification of alternative splicing and prediction of coding potential from RNA-seq data.
| annotatePTC.R | PTC and NMD-sensitivity detection from assembled RNA-seq data |
| CDSSet | Container for coding sequence (CDS) annotation information |
| conditions | Returns sample condictions of an SpliceRList or an CuffSet... |
| dim | Retrieve the Dimensions of a SpliceRList |
| generateGTF | Generate GTF files for transcript visualization in genome... |
| getCDS | Retrieve CDS information from UCSC |
| prepareCuff | Prepare assembled RNA-seq data from Cufflinks for spliceR |
| prepareCuffExample | Prepare the Cufflinks example data |
| preSpliceRFilter | Filters on spliceR-lists for reduction of data sets |
| spliceR | Splice class detection from assembled RNA-seq data |
| SpliceRList | Transcript data and annotation object for spliceR |
| spliceRPlot | Plot venn diagrams of alternative splicing events |
| tools | Returns the transcript or exon GRanges from a SpliceRList... |
| topIsoShift | Returns top transcripts in terms of isoform switching |
| totalNumberOfAS | Returns total number of alternative splicing events |
